Pebalap Spanyol tersebut mencatatkan waktu terbaik 1 menit 47,117 detik untuk mencatatkan pole position ke-empatnya beruntun di Aragon. Marquez diikuti pebalap Suzuki Maverick Vinales dan pebalap Yamaha Jorge Lorenzo.
Pebalap Ducati Andrea Dovizioso menempati posisi empat dalam balapan nanti, lalu pebalap Honda Cal Crutchlow di posisi lima. Pebalap Yamaha Valentino Rossi di posisi enam, lalu berikutnya Dani Pedrosa (Repsol Honda) dan Aleix Espargaro (Suzuki).
Pebalap Amerika Serikat Nicky Hayden tampil menggantikan Jack Miller yang cedera untuk tim Estrella Galicia. Pebalap berusia 35 tahun tersebut finis di posisi 19 dalam kualifikasi.
Hasil kualifikasi MotoGP Aragon:
Qualifying 2:
1. Marc Marquez ESP Repsol Honda Team (RC213V) 1m 47.117s [Lap 2/7] 329km/h (Top Speed)
2. Maverick Viñales ESP Team Suzuki Ecstar (GSX-RR) 1m 47.748s +0.631s [6/7] 330km/h
3. Jorge Lorenzo ESP Movistar Yamaha MotoGP (YZR-M1) 1m 47.778s +0.661s [7/7] 329km/h
4. Andrea Dovizioso ITA Ducati Team (Desmosedici GP) 1m 47.819s +0.702s [6/7] 338km/h
5. Cal Crutchlow GBR LCR Honda (RC213V) 1m 47.843s +0.726s [3/7] 328km/h
6. Valentino Rossi ITA Movistar Yamaha MotoGP (YZR-M1) 1m 47.951s +0.834s [7/7] 329km/h
7. Dani Pedrosa ESP Repsol Honda Team (RC213V) 1m 48.017s +0.900s [6/7] 331km/h
8. Aleix Espargaro ESP Team Suzuki Ecstar (GSX-RR) 1m 48.230s +1.113s [7/7] 326km/h
9. Danilo Petrucci ITA Octo Pramac Yakhnich (Desmosedici GP15) 1m 48.236s +1.119s [6/6] 331km/h
10. Scott Redding GBR Octo Pramac Yakhnich (Desmosedici GP15) 1m 48.242s +1.125s [7/7] 333km/h
11. Pol Espargaro ESP Monster Yamaha Tech 3 (YZR-M1) 1m 48.448s +1.331s [5/6] 325km/h
12. Stefan Bradl GER Factory Aprilia Gresini (RS-GP) 1m 49.083s +1.966s [3/8] 322km/h
Qualifying 1:
13. Hector Barbera ESP Avintia Racing (Desmosedici GP14.2) 1m 48.699s 327km/h
14. Alvaro Bautista ESP Factory Aprilia Gresini (RS-GP) 1m 48.904s 327km/h
15. Yonny Hernandez COL Aspar MotoGP Team (Desmosedici GP14.2) 1m 48.954s 328km/h
16. Eugene Laverty IRL Aspar MotoGP Team (Desmosedici GP14.2) 1m 49.052s 332km/h
17. Michele Pirro ITA Ducati Team (Desmosedici GP) 1m 49.139s 331km/h
18. Tito Rabat ESP Estrella Galicia 0,0 Marc VDS (RC213V)* 1m 49.319s 328km/h
19. Nicky Hayden USA Estrella Galicia 0,0 Marc VDS (RC213V) 1m 49.490s 328km/h
20. Loris Baz FRA Avintia Racing (Desmosedici GP14.2) 1m 49.841s 322km/h
21. Alex Lowes GBR Monster Yamaha Tech 3 (YZR-M1) No Time 0km/h